CUBE Manual

In these pages I will be stringing together my posts in the attempt to make a start to finish manual for how-to do Brain Imaging at CUBIC. This page should be constantly under construction as new questions come in. Let me know of any topic suggestions or required expansions!

Introduction

Welcome!
fMRI
sMRI
DTI
The Dreaded Command Line
Connecting to CHPC

Installing…

How to Install Freesurfer and FSL into your own workspace
Uploading and Downloading your files to the Cluster

How to make your working directory private

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